PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G235800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 369aa    MW: 41427.4 Da    PI: 6.9725
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G235800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.86.6e-21341161098
                         HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          ++++ +++p +fa++++g    s ++ l+ +sg+sW++k+  + ++++++l++GWkeFv+a+++++gD ++Fk++grs+f   v +f+
  Brast02G235800.1.p  34 DFTES-MSIPDRFAKNFNGH--ISEEVNLKYPSGKSWSIKV-ANDTGDEVILRSGWKEFVSAHRIEQGDCLLFKYSGRSSF--DVLMFD 116
                         44444.9*******888666..6779***************.4556666*****************************999..777776 PP

2B337.25.3e-122703561299
                         HTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                  B3  12 ksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                         +++++ ++ +fa +++g    +++++l+   s  +W  ++ +++  +r + + GW++Fv++ngL  +D+++F+l +   + + +v+v+r+
  Brast02G235800.1.p 270 RTSIVGISSEFAGKYMGAV--GREIVLKRaGSRGRWHARF-VSGDYCRGLSGCGWRDFVRDNGLLPKDVCLFELLDGaPRPTATVHVLRR 356
                         44678999*******7664..4589999956669******.5677777789**********************77555999999999886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.3E-2422120IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.6E-2522120IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.9624118IPR003340B3 DNA binding domain
CDDcd100174.55E-2125116No hitNo description
SMARTSM010192.1E-1327118IPR003340B3 DNA binding domain
PfamPF023624.0E-1828115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-14250355IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-14250355IPR015300DNA-binding pseudobarrel domain
CDDcd100174.64E-10254355No hitNo description
SMARTSM010190.0021256357IPR003340B3 DNA binding domain
PROSITE profilePS508639.714259357IPR003340B3 DNA binding domain
PfamPF023623.0E-9271356IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MGKNCELCTE WQEHWYWSHM ADDDKHFFKL MVGDFTESMS IPDRFAKNFN GHISEEVNLK  60
YPSGKSWSIK VANDTGDEVI LRSGWKEFVS AHRIEQGDCL LFKYSGRSSF DVLMFDSNGC  120
EKKSPHPVKN HGRETAQNSA GAGDHHQVLS KTRDRQPHSP PMDSEGTGLQ MTLHKDTGKS  180
IFRACQRDLC HDIEQAHQDK EDCVDVGLDD DGEAASAKTG YYFCKNGPVA EFHLTEEDKE  240
EISSVHVPVE RSNPVFVQVM HTGHVRNTTR TSIVGISSEF AGKYMGAVGR EIVLKRAGSR  300
GRWHARFVSG DYCRGLSGCG WRDFVRDNGL LPKDVCLFEL LDGAPRPTAT VHVLRRLHGR  360
FVRMHGAN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982409.11e-143PREDICTED: B3 domain-containing protein Os03g0622200-like
SwissprotQ10GM31e-130Y3222_ORYSJ; B3 domain-containing protein Os03g0622200
TrEMBLA0A0Q3KSV30.0A0A0Q3KSV3_BRADI; Uncharacterized protein
STRINGMLOC_18038.21e-132(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.18e-31B3 family protein